Classic Stuffed Shells (with Cottage Cheese)
Classic Stuffed Shells (with Cottage Cheese) is a beloved comfort food that brings warmth, nostalgia, and, most importantly, a delightful taste to the dinner table. This dish features large pasta shells filled with a creamy, cheesy mixture, topped with marinara and alfredo sauces. Perfect for family gatherings or a cozy weeknight meal, these stuffed shells are sure to impress.
The combination of cottage cheese, mozzarella, and Parmigiano Reggiano creates a rich and flavorful filling that pairs beautifully with the sauce. With just a handful of ingredients and some love, you can whip up a hearty and satisfying meal that everyone will adore. Let’s dive into the details of this comforting classic.
What Sets This Recipe Apart

What makes this Classic Stuffed Shells (with Cottage Cheese) recipe truly special is the use of low-fat cottage cheese, which adds creaminess without the heaviness of ricotta. The blend of cheeses not only enhances the flavor but also provides a wonderful texture that holds up beautifully in each shell. Additionally, the combination of marinara and alfredo sauces creates a unique flavor profile that elevates this dish from ordinary to extraordinary.
Shopping List
- 12 oz pasta shells (1 box, about 40 shells)
- 4 cups low-fat cottage cheese
- 2 cups grated mozzarella cheese, divided
- 3/4 cup grated Parmigiano Reggiano cheese
- 2 large eggs
- 1 teaspoon dried oregano
- 1 teaspoon dried basil
- Salt and pepper to taste
- 48 oz marinara sauce (2 jars of Rao’s recommended)
- 15 oz alfredo sauce (1 jar)
- Chopped fresh parsley (optional, for garnish)
Essential Tools for Success
- Large pot: For boiling the pasta shells.
- Mixing bowls: A couple of medium-sized bowls for mixing the cheese filling.
- 9×13 inch baking dish: To hold and bake the stuffed shells.
- Spoon or spatula: For filling the pasta shells with the cheese mixture.
- Aluminum foil: To cover the dish while baking.
Directions: Classic Stuffed Shells (with Cottage Cheese)

Step 1: Prepare the Pasta
Start by boiling a large pot of salted water. Once the water reaches a rolling boil, add the pasta shells and cook according to package instructions until al dente, usually about 9-11 minutes. Stir occasionally to prevent sticking. Once cooked, drain the shells and set them aside to cool slightly.
Step 2: Make the Cheese Filling
In a large mixing bowl, combine the low-fat cottage cheese, 1 1/2 cups of grated mozzarella cheese, grated Parmigiano Reggiano, eggs, dried oregano, dried basil, and a pinch of salt and pepper. Mix until well combined, ensuring the eggs are fully incorporated.
Step 3: Fill the Shells
Preheat your oven to 350°F (175°C). Spoon a generous amount of the cheese filling into each cooked pasta shell, making sure to fill them completely. Set the filled shells aside on a plate or baking sheet while you prepare the sauce.
Step 4: Assemble the Dish
In a 9×13 inch baking dish, spread a layer of marinara sauce on the bottom, ensuring even coverage. Arrange the stuffed shells in a single layer on top of the sauce. Once all shells are in place, pour the remaining marinara sauce over the shells, followed by the alfredo sauce. Sprinkle the remaining 1/2 cup of grated mozzarella cheese on top.
Step 5: Bake
Cover the baking dish with aluminum foil and bake in the preheated oven for 25 minutes. After that, remove the foil and continue baking for an additional 15-20 minutes, or until the cheese is bubbly and golden brown.
Step 6: Garnish and Serve
Once baked, remove the dish from the oven and let it cool for a few minutes. Garnish with chopped fresh parsley, if desired, and serve warm. Enjoy your Classic Stuffed Shells (with Cottage Cheese) with a side salad or garlic bread for a complete meal.
In-Season Swaps

- Use fresh spinach or kale in the filling for a nutrition boost.
- Add sautéed mushrooms or grilled zucchini for extra flavor and texture.
- In the summer, consider using fresh basil instead of dried for a burst of freshness.
- In the fall, try incorporating pumpkin puree into the cheese mixture for a seasonal twist.
Avoid These Traps
When making Classic Stuffed Shells (with Cottage Cheese), keep these potential pitfalls in mind:
- Overcooking the pasta shells can lead to breakage, so keep an eye on them while boiling.
- Be sure to let the baked dish cool slightly before serving to prevent burns and ensure the filling stays intact.
- Avoid using too much sauce; it can make the dish watery. Stick to the recommended amounts for the best texture.
- Don’t forget to cover the dish with foil during the first part of baking to keep the moisture in.
Cooling, Storing & Rewarming
Leftover Classic Stuffed Shells (with Cottage Cheese) can be stored in an airtight container in the refrigerator for up to 3 days. To reheat, simply place the desired portion in a microwave-safe dish and heat in short intervals, stirring occasionally, until warmed through. For a crispier top, you can reheat in the oven at 350°F (175°C) until heated through, about 20 minutes.
- For longer storage, freeze the unbaked stuffed shells. Just assemble them, cover tightly, and freeze.
- To bake from frozen, add an additional 10-15 minutes to the baking time.
Quick Questions
Can I use different types of cheese?
Absolutely! While this recipe calls for cottage cheese, mozzarella, and Parmigiano Reggiano, feel free to experiment with ricotta, provolone, or even goat cheese for a different flavor profile.
Can I prepare these stuffed shells ahead of time?
Yes, you can assemble the stuffed shells in advance and store them in the refrigerator for up to 24 hours before baking. Just remember to cover them tightly with foil or plastic wrap.
What can I serve with stuffed shells?
Classic Stuffed Shells (with Cottage Cheese) pair wonderfully with a simple green salad, garlic bread, or roasted vegetables. A light vinaigrette can balance the richness of the dish.
Are there any vegetarian options for the sauce?
Yes! Both marinara and alfredo sauces can be found in vegetarian versions. Just check the labels to ensure there are no animal products included.
Make It Tonight
There’s no better time than now to bring the warmth and comfort of Classic Stuffed Shells (with Cottage Cheese) to your dinner table. With simple ingredients and straightforward steps, this dish can be made any night of the week. Gather your loved ones around and enjoy the delightful flavors of this classic recipe that never goes out of style.
From the first bite to the last, Classic Stuffed Shells (with Cottage Cheese) is a meal that nourishes both the body and the soul. So roll up your sleeves, get cooking, and savor every delicious moment!

Classic Stuffed Shells (with Cottage Cheese)
Ingredients
Equipment
Method
- Start by boiling a large pot of salted water. Once the water reaches a rolling boil, add the pasta shells and cook according to package instructions until al dente, usually about 9-11 minutes. Stir occasionally to prevent sticking. Once cooked, drain the shells and set them aside to cool slightly.
- In a large mixing bowl, combine the low-fat cottage cheese, 1 1/2 cups of grated mozzarella cheese, grated Parmigiano Reggiano, eggs, dried oregano, dried basil, and a pinch of salt and pepper. Mix until well combined, ensuring the eggs are fully incorporated.
- Preheat your oven to 350°F (175°C). Spoon a generous amount of the cheese filling into each cooked pasta shell, making sure to fill them completely. Set the filled shells aside on a plate or baking sheet while you prepare the sauce.
- In a 9x13 inch baking dish, spread a layer of marinara sauce on the bottom, ensuring even coverage. Arrange the stuffed shells in a single layer on top of the sauce. Once all shells are in place, pour the remaining marinara sauce over the shells, followed by the alfredo sauce. Sprinkle the remaining 1/2 cup of grated mozzarella cheese on top.
- Cover the baking dish with aluminum foil and bake in the preheated oven for 25 minutes. After that, remove the foil and continue baking for an additional 15-20 minutes, or until the cheese is bubbly and golden brown.
- Once baked, remove the dish from the oven and let it cool for a few minutes. Garnish with chopped fresh parsley, if desired, and serve warm.
Notes
- For a nutrition boost, add fresh spinach or kale in the filling.
- Consider adding sautéed mushrooms or grilled zucchini for extra flavor.
- Freeze unbaked shells for longer storage; bake from frozen with extra time.
